Hi Bonzai99,
obviously you have activated the "Registration Sequence" function. This overrides the earlier programmed functions of the pedals that are configured for "Regist Sequence +" and/or "Regist Sequence -".
Switch off the "Registration Seqence" function to "re- activate" the previously programmed pedal functions. You could also assign just ONE pedal (for "Regist Sequence +") and set the second pedal to OFF. Then you can use two pedals with standard functions.
Hope this helps!
Best regards,
Chris